WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C12D12.5a Sequence Name  C12D12.5a
Length (nt)  675   Chromosome Location  X: 3505566-3505829
Chromosome . Primary Identifier  X Chromosome Location . Start  3505566
Chromosome Location . End  3505829
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C12D12.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE45710 SOX-4, isoform a 25.4 224 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00040379
WBRNAi00010639

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
CDS:C12D12.5a 3505566 3505829 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015716 sox-4 C12D12.5 Caenorhabditis elegans

3 Locations


Feature . Primary Identifier 		Start End Strand
CDS:C12D12.5a 3505566 3505829 -1
CDS:C12D12.5a 3505904 3506035 -1
CDS:C12D12.5a 3506087 3506365 -1

1 Sequence

Length
675

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C12D12.5a.1 C12D12.5a.1 1090   X: 3505270-3509006
Transcript:C12D12.5a.2 C12D12.5a.2 1022   X: 3505279-3506425