WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C12D12.5a.1 Sequence Name  C12D12.5a.1
Length (nt)  1090   Chromosome Location  X: 3505270-3509006
Chromosome . Primary Identifier  X Chromosome Location . Start  3505270
Chromosome Location . End  3509006 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C12D12.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015716 sox-4 C12D12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C12D12.5a C12D12.5a 675   X: 3505566-3505829

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C12D12.5a.1 3505270 3509006 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

4 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228609   560   X: 3505270-3505829 Caenorhabditis elegans
Exon228612   132   X: 3505904-3506035 Caenorhabditis elegans
Exon228615   333   X: 3506087-3506419 Caenorhabditis elegans
Exon228619   65   X: 3508942-3509006 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C12D12.5a.1 3505270 3509006 -1

1 Sequence

Length
1090

1 Sequence Ontology Term

Identifier Name Description
transcript