WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077442 Gene Name  F11D11.16
Sequence Name  ? F11D11.16 Organism  Caenorhabditis elegans
Biotype  SO:0000336 Genetic Position  :±
Length (nt)  ? 833
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077442

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

34 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
WBVar02124841
gk963292
WBVar02120719
gk962724
WBVar02120528
gk963480
WBVar02123778
WBVar02122704
WBVar02124975
WBVar02122873
WBVar00091258
WBVar01977669
gk894897
gk664742
gk806743
gk794957
gk859698
gk836026
WBVar02025560
WBVar01597161
WBVar01597160
ttTi11853
WBVar00053537
WBVar00273366
WBVar01750186

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077442 18756846 18757678 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18756761..18756845   85 V: 18756761-18756845 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. Transcripts that showed significantly increased expression in shk-1(yum1003) animals infected by bacteria strain Vibrio cholerae A1552. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:V.cholerae_upregulated_shk-1(yum1003)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077442 18756846 18757678 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
833

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18757679..18757923   245 V: 18757679-18757923 Caenorhabditis elegans