WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00050958 Gene Name  F28B1.10
Sequence Name  ? F28B1.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by CGP37157 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 709
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00050958

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

82 Allele

Public Name
gk963271
gk963489
gk963304
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124497
WBVar02124059
WBVar02124270
WBVar02121796
WBVar02123142
WBVar02124430
WBVar02122255
gk962630
WBVar02124910
WBVar02124629
WBVar02121640
WBVar02123709
WBVar02122690
tm10608
WBVar02124729
WBVar01652949
WBVar01652948
WBVar02025211
gk954107
WBVar01810510
WBVar01810509
WBVar01810508
gk259410

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00050958 17067146 17067854 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17066472..17067145   674 V: 17066472-17067145 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. Transcripts that showed significantly increased expression in shk-1(yum1003) animals infected by bacteria strain Vibrio cholerae A1552. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:V.cholerae_upregulated_shk-1(yum1003)
Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. Transcripts that showed significantly increased expression in N2 animals infected by bacteria strain Vibrio cholerae A1552. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:V.cholerae_upregulated_N2
  Transcripts that showed significantly decreased expression after treated by 50uM CGP37157 (7-chloro-5-(2-chlorophenyl)-1,5-dihydro-4,1-benzothiazepin-2-one) for 5 days starting from young adult stage. DESeq fold change > 2, p-value < 0.05 WBPaper00061590:CGP37157_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00050958 17067146 17067854 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
709

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17067855..17068621   767 V: 17067855-17068621 Caenorhabditis elegans