WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VC5.3a.1 Sequence Name  VC5.3a.1
Length (nt)  4533   Chromosome Location  V: 7075877-7081580
Chromosome . Primary Identifier  V Chromosome Location . Start  7075877
Chromosome Location . End  7081580 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VC5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003786 npa-1 VC5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VC5.3a VC5.3a 4323   V: 7075961-7076005

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:VC5.3a.1 7075877 7081580 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon186769   129   V: 7075877-7076005 Caenorhabditis elegans
Exon186773   35   V: 7076351-7076385 Caenorhabditis elegans
Exon186779   694   V: 7076495-7077188 Caenorhabditis elegans
Exon186785   372   V: 7077232-7077603 Caenorhabditis elegans
Exon186792   372   V: 7077659-7078030 Caenorhabditis elegans
Exon186800   372   V: 7078076-7078447 Caenorhabditis elegans
Exon186807   372   V: 7078490-7078861 Caenorhabditis elegans
Exon186813   375   V: 7078907-7079281 Caenorhabditis elegans
Exon186821   378   V: 7079328-7079705 Caenorhabditis elegans
Exon186829   1215   V: 7079752-7080966 Caenorhabditis elegans
Exon186846   219   V: 7081362-7081580 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:VC5.3a.1 7075877 7081580 1

1 Sequence

Length
4533

1 Sequence Ontology Term

Identifier Name Description
transcript