Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:C06A12.20 | C06A12.20 |
729
 |
IV: 17438395-17439169 |
Other
25 Allele
| Public Name |
|---|
| gk964500 |
| gk962765 |
| gk963888 |
| gk962761 |
| gk962759 |
| gk963492 |
| gk963300 |
| WBVar01970353 |
| WBVar01970354 |
| gk797153 |
| gk875299 |
| WBVar01840873 |
| WBVar01840874 |
| WBVar01673594 |
| WBVar01673595 |
| WBVar01673593 |
| WBVar02090302 |
| WBVar01800030 |
| gk223392 |
| gk223391 |
| gk223390 |
| WBVar02097091 |
| WBVar02004403 |
| WBVar02004402 |
| otn5307 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00255703 | 17438395 | 17439169 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_17438235..17438394 | 160 | IV: 17438235-17438394 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066594:ilc-17.1(syb5296)_upregulated | |
| Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_downregulated_neuron | |
| Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. | Transcripts that showed significantly increased expression in shk-1(yum1003) animals infected by bacteria strain Vibrio cholerae A1552. | DESeq2 v1.36.0, fold change > 2, FDR < 0.05. | WBPaper00067803:V.cholerae_upregulated_shk-1(yum1003) |
| Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. | Transcripts that showed significantly increased expression in N2 animals infected by bacteria strain Vibrio cholerae A1552. | DESeq2 v1.36.0, fold change > 2, FDR < 0.05. | WBPaper00067803:V.cholerae_upregulated_N2 |
| Transcripts that showed significantly increased expression in animals with degron-induced neuronal DAF-15 depletion. | DESeq2. Fold change > 2, p-value < 0.05. | WBPaper00066168:neuronal-DAF-15-depleted_upregulated |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_17439170..17439609 | 440 | IV: 17439170-17439609 | Caenorhabditis elegans |
