Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y116A8C.470.1 | Y116A8C.470.1 |
162
 |
IV: 16919151-16919312 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y116A8C.470 | Y116A8C.470 |
162
|
IV: 16919151-16919312 |
17 Allele
| Public Name |
|---|
| gk964078 |
| gk964500 |
| gk962765 |
| gk963590 |
| gk963795 |
| gk962529 |
| gk963948 |
| gk963888 |
| WBVar02122004 |
| WBVar01669597 |
| WBVar01669596 |
| WBVar01669595 |
| gk634391 |
| gk314410 |
| WBVar02004012 |
| gk222415 |
| gk222414 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00255611 | 16919151 | 16919312 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_16918502..16919150 | 649 | IV: 16918502-16919150 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in dissected female germline comparing to in dissected male germline. | Log2 Fold change > 2 or <-1, p-value < 0.05. | WBPaper00053599:female_vs_male_downregulated | |
| Transcripts that showed significantly decreased expression in eat-2(ad465);dve-1(RNAi) animals comparing to eat-2(ad465) animals injected with empty vector. | fold change > 2, FDR < 0.01 | WBPaper00067391:dve-1(RNAi)_downregulated_eat-2(ad465) | |
| Transcripts that showed significantly increased expression in N2 comparing to in skn-1 gain of function allele lax188 animals | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00067765:skn-1(lax188)_downregulated_N2 | |
| Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. | Transcripts that showed significantly increased expression in shk-1(yum1003) animals infected by bacteria strain Vibrio cholerae A1552. | DESeq2 v1.36.0, fold change > 2, FDR < 0.05. | WBPaper00067803:V.cholerae_upregulated_shk-1(yum1003) |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr2007059 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_16919313..16919724 | 412 | IV: 16919313-16919724 | Caenorhabditis elegans |
