WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0546.2a.1 Sequence Name  B0546.2a.1
Length (nt)  1581   Chromosome Location  IV: 3373387-3378130
Chromosome . Primary Identifier  IV Chromosome Location . Start  3373387
Chromosome Location . End  3378130 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0546.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015249 otub-4 B0546.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0546.2a B0546.2a 1311   IV: 3373631-3373752

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0546.2a.1 3373387 3378130 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116944   366   IV: 3373387-3373752 Caenorhabditis elegans
Exon116946   351   IV: 3374435-3374785 Caenorhabditis elegans
Exon116948   162   IV: 3375339-3375500 Caenorhabditis elegans
Exon116950   313   IV: 3376172-3376484 Caenorhabditis elegans
Exon116953   173   IV: 3376988-3377160 Caenorhabditis elegans
Exon116954   119   IV: 3377868-3377986 Caenorhabditis elegans
Exon116955   97   IV: 3378034-3378130 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0546.2a.1 3373387 3378130 -1

1 Sequence

Length
1581

1 Sequence Ontology Term

Identifier Name Description
transcript