WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C38C10.5a.1 Sequence Name  C38C10.5a.1
Length (nt)  4657   Chromosome Location  III: 9393730-9404541
Chromosome . Primary Identifier  III Chromosome Location . Start  9393730
Chromosome Location . End  9404541 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38C10.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004343 rgr-1 C38C10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38C10.5a C38C10.5a 4149   III: 9394104-9394247

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C38C10.5a.1 9393730 9404541 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon100365   201   III: 9393730-9393930 Caenorhabditis elegans
Exon100366   269   III: 9393979-9394247 Caenorhabditis elegans
Exon100368   1081   III: 9394299-9395379 Caenorhabditis elegans
Exon100370   601   III: 9395477-9396077 Caenorhabditis elegans
Exon100372   175   III: 9396525-9396699 Caenorhabditis elegans
Exon100375   159   III: 9397860-9398018 Caenorhabditis elegans
Exon100377   554   III: 9398228-9398781 Caenorhabditis elegans
Exon100379   209   III: 9399075-9399283 Caenorhabditis elegans
Exon100381   282   III: 9399369-9399650 Caenorhabditis elegans
Exon100383   65   III: 9400117-9400181 Caenorhabditis elegans
Exon100385   111   III: 9400225-9400335 Caenorhabditis elegans
Exon100390   120   III: 9403081-9403200 Caenorhabditis elegans
Exon100392   68   III: 9403257-9403324 Caenorhabditis elegans
Exon100394   356   III: 9403734-9404089 Caenorhabditis elegans
Exon100397   406   III: 9404136-9404541 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C38C10.5a.1 9393730 9404541 1

1 Sequence

Length
4657

1 Sequence Ontology Term

Identifier Name Description
transcript