WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3CL.5a.1 Sequence Name  Y39A3CL.5a.1
Length (nt)  2306   Chromosome Location  III: 1807740-1818323
Chromosome . Primary Identifier  III Chromosome Location . Start  1807740
Chromosome Location . End  1818323 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3CL.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000545 clp-4 Y39A3CL.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3CL.5a Y39A3CL.5a 2151   III: 1807891-1807900

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y39A3CL.5a.1 1807740 1818323 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80247   161   III: 1807740-1807900 Caenorhabditis elegans
Exon80248   420   III: 1807955-1808374 Caenorhabditis elegans
Exon80251   275   III: 1809118-1809392 Caenorhabditis elegans
Exon80254   144   III: 1809690-1809833 Caenorhabditis elegans
Exon80255   323   III: 1811052-1811374 Caenorhabditis elegans
Exon80256   348   III: 1812755-1813102 Caenorhabditis elegans
Exon80258   450   III: 1814397-1814846 Caenorhabditis elegans
Exon80259   126   III: 1815443-1815568 Caenorhabditis elegans
Exon80260   59   III: 1818265-1818323 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y39A3CL.5a.1 1807740 1818323 -1

1 Sequence

Length
2306

1 Sequence Ontology Term

Identifier Name Description
transcript