WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00271831 Gene Name  Y46D2A.6
Sequence Name  ? Y46D2A.6 Organism  Caenorhabditis elegans
Automated Description  Enriched in cholinergic neurons based on single-cell RNA-seq studies. Is affected by lpd-3 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 371
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00271831

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y46D2A.6 Y46D2A.6 303   II: 3323761-3324131
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00037122

42 Allele

Public Name
gk964317
gk963801
gk963053
WBVar02122302
WBVar02120456
WBVar02123019
WBVar02122780
WBVar02122532
WBVar02124390
WBVar02122098
WBVar02122355
WBVar02124673
WBVar02120786
WBVar02120617
WBVar02121131
WBVar02123186
WBVar02123659
WBVar02121370
WBVar02122914
WBVar02122218
WBVar02121721
gk964209
gk964210
WBVar02124763
WBVar02121950
WBVar02120928
tm10837
WBVar00091192
WBVar01693905
gk963281

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00271831 3323761 3324131 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 1 adult hermaphrodite comparing to in L4 larva glp-1(e2141) animals. Fold change > 2, FDR < 0.05 WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
  Transcripts that showed significantly increased expression in day 3 adult hermaphrodite comparing to in L4 larva glp-1(e2141) animals. Fold change > 2, FDR < 0.05 WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. Transcripts that showed significantly increased expression in shk-1(yum1003) animals infected by bacteria strain Vibrio cholerae A1552. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:V.cholerae_upregulated_shk-1(yum1003)
  Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals. DESeq2, fold change > 4, FDR < 0.05. WBPaper00064661:lpd-3(ok2138)_upregulated
Bacteria: P.aeruginosa strain PA14 Transcripts that showed significantly increased expression after infection by P. aeruginosa PA14. Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05. WBPaper00059754:P.aeruginosa_PA14_upregulated
Bacteria infection: Vibrio cholerae A1552, 8 hours at L4 larva stage. Transcripts that showed significantly increased expression in N2 animals infected by bacteria strain Vibrio cholerae A1552. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:V.cholerae_upregulated_N2
  Single-cell RNA-Seq cell group 6_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:6_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00271831 3323761 3324131 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
371

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region