WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54D12.6a.1 Sequence Name  F54D12.6a.1
Length (nt)  2746   Chromosome Location  II: 1368103-1374988
Chromosome . Primary Identifier  II Chromosome Location . Start  1368103
Chromosome Location . End  1374988 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54D12.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018819 rog-1 F54D12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54D12.6a F54D12.6a 1800   II: 1369046-1369145

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54D12.6a.1 1368103 1374988 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon40929   1043   II: 1368103-1369145 Caenorhabditis elegans
Exon40930   284   II: 1369816-1370099 Caenorhabditis elegans
Exon40935   466   II: 1371521-1371986 Caenorhabditis elegans
Exon40937   165   II: 1372457-1372621 Caenorhabditis elegans
Exon40940   139   II: 1372921-1373059 Caenorhabditis elegans
Exon40941   150   II: 1373266-1373415 Caenorhabditis elegans
Exon40946   145   II: 1373781-1373925 Caenorhabditis elegans
Exon40950   194   II: 1374404-1374597 Caenorhabditis elegans
Exon40952   160   II: 1374829-1374988 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54D12.6a.1 1368103 1374988 -1

1 Sequence

Length
2746

1 Sequence Ontology Term

Identifier Name Description
transcript