WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026887 Gene Name  CBG04160
Sequence Name  ? CBG04160 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans T02E1.7. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04160.3 CBG04160.3   [unknown]
Transcript:CBG04160.4 CBG04160.4   [unknown]
Transcript:CBG04160.5 CBG04160.5   [unknown]
Transcript:CBG04160.6 CBG04160.6   [unknown]
Transcript:CBG04160.1 CBG04160.1   [unknown]
Transcript:CBG04160.2 CBG04160.2   [unknown]
Transcript:CBG04160.7 CBG04160.7   [unknown]
Transcript:CBG04160.8 CBG04160.8   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04160 CBG04160   [unknown]

0 RNAi Result

23 Allele

Public Name
WBVar00109037
WBVar00109038
WBVar00109039
WBVar00109047
WBVar00109048
WBVar00109049
WBVar00109040
WBVar00109041
WBVar00109042
WBVar00109043
WBVar00109044
WBVar00109045
WBVar00109046
WBVar00109058
WBVar00109059
WBVar00109050
WBVar00109051
WBVar00109052
WBVar00109053
WBVar00109054
WBVar00109055
WBVar00109056
WBVar00109057

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG04160, GATACAAGACCCGAATGATTAGTTTCATGCTTTCCGCATGGCTTCTGGCATACAATATCT, WBGene00026887   Expr1059178 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region