WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024561 Gene Name  CBG01302
Sequence Name  ? CBG01302 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable heme binding activity; iron ion binding activity; and oxidoreductase activity. Is an ortholog of C. elegans cyp-13A7; cyp-13A5; and cyp-13A4. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

10 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01302.1 CBG01302.1   [unknown]
Transcript:CBG01302.9 CBG01302.9   [unknown]
Transcript:CBG01302.8 CBG01302.8   [unknown]
Transcript:CBG01302.7 CBG01302.7   [unknown]
Transcript:CBG01302.6 CBG01302.6   [unknown]
Transcript:CBG01302.5 CBG01302.5   [unknown]
Transcript:CBG01302.4 CBG01302.4   [unknown]
Transcript:CBG01302.3 CBG01302.3   [unknown]
Transcript:CBG01302.2 CBG01302.2   [unknown]
Transcript:CBG01302.10 CBG01302.10   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01302 CBG01302   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00135778
WBVar00135779
WBVar00135780
WBVar00135781
WBVar00135782
WBVar00135783
WBVar00135784

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_upregulated
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG01302, TCAGTGTATTGGAATGCGGTTGGCTTATATGGAAGAGAAACTTTTACTGTGCCACATTTT, WBGene00024561   Expr1053456 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region