WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00003004 Gene Name  lin-15
Brief Description  lin-15 is a complex locus containing two non-overlapping transcripts, lin-15A and lin-15B, separated by less than 150 bp and transcribed in the same direction. LIN-15A and B proteins are novel and have a THAP zinc-finger-like (C2CH) motif. The lin-15A transcript is processed with the addition of an SL1 or and SL2 trans-splice leader. lin-15B has only been shown to have an SL1 added. These features suggest the lin-15 locus encodes a single polycistronic mRNA. Alleles of lin-15 were first obtained based on the Multivulva (Muv) phenotype. More alleles were identified in screens for vulval cell lineage mutants, where all six vulval precursor cells (VPCs) adopt vulval fates, causing the Muv phenotype. Initial studies of these alleles showed lin-15 to have two independently mutable activities, A and B; A and B class Muv genes were defined by synthetic genetic interactions with lin-8 and lin-9, respectively. Homozygous class A or B mutants do not exhibit any vulval phenotypes whereas A+B double homozygotes are Syn-Muv. While some lin-15 alleles fall into either the A OR B classes, for example, n767 and n744 respectively, most of the alleles are Muv as homozygotes alone and hence are AB mutants, for example, n765. Molecular analysis showed that the lin-15 locus comprised two independent transcripts with the downstream transcript encoding lin-15A function and the upstream transcript encoding lin-15B function. A and B mutant alleles alter the downstream and upstream functions, respectively, and AB alleles affect both transcripts. Further, all single homozyogus Muv alleles proved to be rearrangements or deletions in the lin-15 locus. Although A and B functions are genetically redundant, A function can not rescue B function and thus A and B are not molecularly redundant. Fragments of the lin-15 locus that rescue either lin-15A or lin-15B are common and useful coinjection transgenic markers when using a lin-15(n765tsAB) mutant background. Organism  Caenorhabditis elegans
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

0 Synonyms

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

1 Allele

Public Name
n765

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

44 Strains

WormBase ID
WBStrain00022451
WBStrain00023622
WBStrain00023637
WBStrain00026419
WBStrain00026418
WBStrain00026417
WBStrain00026421
WBStrain00026420
WBStrain00026900
WBStrain00026972
WBStrain00026879
WBStrain00026876
WBStrain00026746
WBStrain00026768
WBStrain00027359
WBStrain00027374
WBStrain00027399
WBStrain00027602
WBStrain00027524
WBStrain00027556
WBStrain00027555
WBStrain00027561
WBStrain00027237
WBStrain00047119
WBStrain00047121
WBStrain00040018
WBStrain00040016
WBStrain00035061
WBStrain00035060
WBStrain00035059

0 Upstream Intergenic Region