WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00303371 Gene Name  F59F4.6
Sequence Name  ? F59F4.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  X:± Length (nt)  ? 1406
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00303371

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F59F4.6 F59F4.6 392   X: 15829901-15831306
 

Other

0 CDSs

0 RNAi Result

51 Allele

Public Name
gk964260
gk962707
gk963810
gk963581
gk721131
gk900882
gk368673
gk731949
gk895369
gk544900
gk729933
gk626425
gk963633
gk963982
WBVar01929205
WBVar01929206
WBVar02122488
WBVar02121514
WBVar02120897
WBVar02122290
WBVar01602635
gk304325
gk304323
gk304324
gk304322
WBVar01760920
WBVar01826175
WBVar01826174
WBVar01826176
WBVar01981822

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00303371 15829901 15831306 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15831307..15831416   110 X: 15831307-15831416 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00303371 15829901 15831306 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1406

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15829356..15829900   545 X: 15829356-15829900 Caenorhabditis elegans