WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219352 Gene Name  Y7A5A.21
Sequence Name  ? Y7A5A.21 Organism  Caenorhabditis elegans
Automated Description  Is affected by skn-1 and rotr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 413
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219352

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

27 Allele

Public Name
gk964260
gk962707
gk963810
gk964354
gk963581
gk673704
gk864274
gk326489
gk963633
gk963982
WBVar01929187
WBVar02122488
WBVar02121514
WBVar02120897
WBVar02122290
WBVar02122884
gk964295
WBVar02120549
WBVar02122744
WBVar02123746
WBVar00086914
WBVar01553917
WBVar02050763
WBVar02071495
WBVar01826167
WBVar00222130
WBVar01988264

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219352 15820053 15820465 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15820466..15821007   542 X: 15820466-15821007 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts that showed significantly increased expression in rotr-1(ums53) comparing to in N2 animals. Differentially expressed genes were identified using Sleuth (version 0.30.0). WBPaper00067263:rotr-1(ums53)_upregulated
  Transcripts that showed significantly increased expression in skn-1(lax188) gain of function comparing to in N2 at day 2 adult stage. fold change > 2 WBPaper00058711:skn-1(lax188)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219352 15820053 15820465 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
413

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15819542..15820052   511 X: 15819542-15820052 Caenorhabditis elegans