WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195729 Gene Name  Y7A5A.14
Sequence Name  ? Y7A5A.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 and rpc-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 104
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195729

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y7A5A.14 Y7A5A.14 104   X: 15773313-15773416
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk964260
gk962707
gk963810
gk964354
gk963581
gk963633
gk963982
tm11377
WBVar02121513
WBVar02122487
WBVar02121917
WBVar02120896

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195729 15773313 15773416 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15773417..15773522   106 X: 15773417-15773522 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  mRNAs that showed significantly decreased expression in monosomal fractions in N2 comparing to in daf-2(e1370), according to RNAseq study. Differentially expressed genes were determined using cuffdiff across all pairs. WBPaper00046337:monosomal_N2_vs_daf-2_downregulated
  Small RNAs (less than 200 bases long) that showed significantly increased expression in rpc-1(RNAi) animals. DESeq2, fold change > 2, FDR < 0.05. WBPaper00067416:rpc-1(RNAi)_upregulated_smallRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195729 15773313 15773416 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
104

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15772736..15773312   577 X: 15772736-15773312 Caenorhabditis elegans