WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219600 Gene Name  linc-118
Sequence Name  ? K09E9.13 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons; sensory neurons; and ut4 based on RNA-seq and single-cell RNA-seq studies. Biotype  SO:0001641
Genetic Position  X :22.9313± Length (nt)  ? 416
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219600

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K09E9.13 K09E9.13 116   X: 15617415-15617830
 

Other

0 CDSs

0 RNAi Result

25 Allele

Public Name
gk964260
gk962707
gk963810
gk964354
gk963581
WBVar01929085
WBVar01929084
WBVar01929087
WBVar01929086
gk303831
gk303832
gk303829
gk303830
WBVar00086666
WBVar02005586
gk687444
WBVar00103314
WBVar01553584
WBVar01553583
WBVar00222048
WBVar00222047
WBVar00234416
WBVar00234415
WBVar01788328
WBVar02027818

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219600 15617415 15617830 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15617831..15619490   1660 X: 15617831-15619490 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. Fold change > 2, p-value < 0.05. WBPaper00060661:sensory-neuron_enriched
  Single-cell RNA-Seq cell group 13_1 expressed in epithelium. scVI 0.6.0 WBPaper00065841:13_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219600 15617415 15617830 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
416

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_15616754..15617414   661 X: 15616754-15617414 Caenorhabditis elegans