WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197455 Gene Name  F45B8.12
Sequence Name  ? F45B8.12 Organism  Caenorhabditis elegans
Automated Description  Enriched in ADAL; PVS; neurons; and spermathecal-uterine valve cell based on RNA-seq and single-cell RNA-seq studies. Is affected by daf-2 based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 210
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197455

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F45B8.12 F45B8.12 210   X: 14958295-14958504
 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
gk963581
gk463819
gk302280
h15332
gk677135

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197455 14958295 14958504 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Single-cell RNA-Seq cell group 93_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:93_0
  Single-cell RNA-Seq cell group 60_0 expressed in valve. scVI 0.6.0 WBPaper00065841:60_0
  Single-cell RNA-Seq cell group 66_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:66_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197455 14958295 14958504 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
210

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_14958505..14958670   166 X: 14958505-14958670 Caenorhabditis elegans