Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:M163.21.1 | M163.21.1 |
234
 |
X: 14466832-14467615 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:M163.21 | M163.21 |
234
|
X: 14466832-14466840 |
28 Allele
| Public Name |
|---|
| gk964260 |
| gk964029 |
| gk962707 |
| gk964028 |
| gk963810 |
| gk963581 |
| gk963779 |
| gk963780 |
| tm10331 |
| WBVar02124515 |
| WBVar02124658 |
| gk963434 |
| gk301046 |
| gk301047 |
| gk301049 |
| gk301048 |
| WBVar00101957 |
| WBVar01552913 |
| WBVar01552912 |
| WBVar00218431 |
| WBVar00218430 |
| WBVar01942115 |
| WBVar01704208 |
| gk849760 |
| gk587768 |
| gk691643 |
| gk589154 |
| WBVar01472518 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00304194 | 14466832 | 14467615 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_14467616..14469583 | 1968 | X: 14467616-14469583 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genes expressed in N2. | Expressed transcripts were identified on the basis of a Present call in 3 out of 4 N2 experiments as determined by Affymetrix MAS 5.0. | WBPaper00025141:N2_Expressed_Genes | |
| heat-shock hlh-1 | Genes enriched in HLH-1 heat shock dataset. | A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. | WBPaper00031003:hlh_1_enriched |
| Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_downregulated_neuron | |
| Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum | Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. | GFold3, logFC < -1 or > 1. | WBPaper00066703:L.plantarum-pdxH_upregulated |
| Bacteria infection: Pseudomonas aeruginosa PA14 | Genes downregulated in worms grown on wild-type P. aeruginosa PA14 as compared to worms grown on an isogenic PA14 mutant gacA for 8 hours by at least 2 fold and P < 0.01, as determined by a t-test. | At least 2 fold and P < 0.01, as determined by a t-test. | WBPaper00028789:PA14_vs_gacA_downregulated_8hr |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_14466375..14466831 | 457 | X: 14466375-14466831 | Caenorhabditis elegans |
