WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201369 Gene Name  F55F3.8
Sequence Name  ? F55F3.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by pabp-2 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 151
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201369

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F55F3.8 F55F3.8 151   X: 13781584-13781734
 

Other

0 CDSs

0 RNAi Result

14 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
gk963581
gk962579
gk962729
WBVar02068029
gk299484
gk952270
gk892506
gk788727
WBVar01572675

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201369 13781584 13781734 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_13780268..13781583   1316 X: 13780268-13781583 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed signifcantly decreased expression in pabp-2(RNAi) animals comparing to in N2 animals injected with empty vector at L1 larva stage and collected at L4 larva stage. FDR < 0.05, fold change > 2 WBPaper00067368:pabp-2(RNAi)_downregulated_N2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201369 13781584 13781734 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
151

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_13781735..13782242   508 X: 13781735-13782242 Caenorhabditis elegans