WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5c.1 Sequence Name  C40C9.5c.1
Length (nt)  2854   Chromosome Location  X: 13626149-13631095
Chromosome . Primary Identifier  X Chromosome Location . Start  13626149
Chromosome Location . End  13631095 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5c C40C9.5c 2385   X: 13626618-13626761

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C40C9.5c.1 13626149 13631095 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258042   613   X: 13626149-13626761 Caenorhabditis elegans
Exon258046   105   X: 13626916-13627020 Caenorhabditis elegans
Exon258054   143   X: 13627183-13627325 Caenorhabditis elegans
Exon258063   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258072   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258081   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258092   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258099   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258106   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258113   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258121   275   X: 13630241-13630515 Caenorhabditis elegans
Exon258127   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258134   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258139   47   X: 13631049-13631095 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C40C9.5c.1 13626149 13631095 -1

1 Sequence

Length
2854

1 Sequence Ontology Term

Identifier Name Description
transcript