WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5a.1 Sequence Name  C40C9.5a.1
Length (nt)  2739   Chromosome Location  X: 13625419-13631166
Chromosome . Primary Identifier  X Chromosome Location . Start  13625419
Chromosome Location . End  13631166 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5a C40C9.5a 2397   X: 13625690-13625744

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C40C9.5a.1 13625419 13631166 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258027   326   X: 13625419-13625744 Caenorhabditis elegans
Exon258034   110   X: 13625788-13625897 Caenorhabditis elegans
Exon258044   105   X: 13626916-13627020 Caenorhabditis elegans
Exon258052   143   X: 13627183-13627325 Caenorhabditis elegans
Exon258061   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258070   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258079   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258090   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258097   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258104   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258111   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258118   266   X: 13630241-13630506 Caenorhabditis elegans
Exon258125   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258132   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258143   118   X: 13631049-13631166 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C40C9.5a.1 13625419 13631166 -1

1 Sequence

Length
2739

1 Sequence Ontology Term

Identifier Name Description
transcript