WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VF11C1L.1b.1 Sequence Name  VF11C1L.1b.1
Length (nt)  4816   Chromosome Location  X: 12968950-12975643
Chromosome . Primary Identifier  X Chromosome Location . Start  12968950
Chromosome Location . End  12975643 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VF11C1L.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004089 ppk-3 VF11C1L.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VF11C1L.1b VF11C1L.1b 4503   X: 12969263-12969424

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:VF11C1L.1b.1 12968950 12975643 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon256547   475   X: 12968950-12969424 Caenorhabditis elegans
Exon256549   253   X: 12969642-12969894 Caenorhabditis elegans
Exon256551   401   X: 12970057-12970457 Caenorhabditis elegans
Exon256553   735   X: 12970695-12971429 Caenorhabditis elegans
Exon256555   211   X: 12971588-12971798 Caenorhabditis elegans
Exon256557   636   X: 12971856-12972491 Caenorhabditis elegans
Exon256559   92   X: 12972809-12972900 Caenorhabditis elegans
Exon256561   495   X: 12972948-12973442 Caenorhabditis elegans
Exon256563   594   X: 12973602-12974195 Caenorhabditis elegans
Exon256565   269   X: 12974254-12974522 Caenorhabditis elegans
Exon256567   336   X: 12974714-12975049 Caenorhabditis elegans
Exon256569   114   X: 12975102-12975215 Caenorhabditis elegans
Exon256571   126   X: 12975390-12975515 Caenorhabditis elegans
Exon256572   79   X: 12975565-12975643 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:VF11C1L.1b.1 12968950 12975643 -1

1 Sequence

Length
4816

1 Sequence Ontology Term

Identifier Name Description
transcript