Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F42F12.t1 | F42F12.t1 |
84
 |
X: 12348007-12348126 |
Other
17 Allele
| Public Name |
|---|
| gk964260 |
| gk964029 |
| gk962707 |
| gk964028 |
| gk963810 |
| WBVar02123784 |
| gk963419 |
| WBVar02122184 |
| WBVar02122059 |
| WBVar02121070 |
| WBVar02124853 |
| WBVar02123865 |
| WBVar02123642 |
| gk963111 |
| gk730553 |
| gk817779 |
| gk895363 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00014373 | 12348007 | 12348126 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_12347900..12348006 | 107 | X: 12347900-12348006 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00065975:P-body_vs_oocyte_depleted | |
| Transcripts that showed significantly increased expression in npp-14(ax4543) comparing to in N2. | DESeq2. Statistically significant genes were chosen based on a BenjaminiHochberg adjusted P-value of 0.05. | WBPaper00067885:npp-14(ax4543)_upregulated | |
| Fungi infection: Fusarium oxysporum | Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. | The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. | WBPaper00053368:F.oxysporum_regulated |
| Transcripts that showed significantly decreased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. | DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. | WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_12348127..12348628 | 502 | X: 12348127-12348628 | Caenorhabditis elegans |
