WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00269422 Gene Name  T01H10.11
Sequence Name  ? T01H10.11 Organism  Caenorhabditis elegans
Automated Description  Enriched in I2L based on single-cell RNA-seq studies. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 465
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00269422

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T01H10.11.1 T01H10.11.1 279   X: 12123452-12123916
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01H10.11 T01H10.11 279   X: 12123452-12123509

2 RNAi Result

WormBase ID
WBRNAi00017998
WBRNAi00066368

14 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
gk964105
gk964104
WBVar00083451
WBVar01571257
gk295694
WBVar01571256
gk561562
tm10992
gk789417

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00269422 12123452 12123916 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_2
  Single-cell RNA-Seq cell group 58_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:58_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00269422 12123452 12123916 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
465

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region