WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023090 Gene Name  K01A12.t4
Sequence Name  ? K01A12.t4 Organism  Caenorhabditis elegans
Automated Description  Is affected by hmg-3 and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 72
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023090

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K01A12.t4 K01A12.t4 72   X: 8623998-8624069
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00016363

11 Allele

Public Name
gk964260
gk962707
gk963896
gk963732
gk964126
gk964234
gk964233
gk964092
tm10848
h18121
gk330365

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00023090 8623998 8624069 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that interact with HMG-3-HA in BAT1753 [hmg-3(bar24[hmg-3-3xHA]) I] at L4 larva stage. N.A. WBPaper00055013:HMG-3_interacting_transcript

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00023090 8623998 8624069 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
72

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region