WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00022979 Gene Name  F08F1.t1
Sequence Name  ? F08F1.t1 Organism  Caenorhabditis elegans
Automated Description  Is affected by mrps-5 based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 82
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00022979

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F08F1.t1 F08F1.t1 82   X: 8419414-8419495
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00030652

10 Allele

Public Name
gk964260
gk962707
gk964193
gk964194
gk963896
gk963732
gk964126
gk964401
gk964402
tm10711

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00022979 8419414 8419495 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector. Differential expression was assessed using a Partial least-squares discriminant analysis (PLS-DA) using mixomics setting a variable of importance (VIP) score of greater than 1 as significant. WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00022979 8419414 8419495 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
82

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region