WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005238 Gene Name  srh-12
Sequence Name  ? R09F10.11 Organism  Caenorhabditis elegans
Biotype  SO:0000336 Genetic Position  X :-0.163688±
Length (nt)  ? 755
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005238

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

27 Allele

Public Name
gk964260
gk962707
gk964193
gk964194
gk963896
gk963732
WBVar01927616
gk964126
tm11434
tm11437
WBVar02085853
gk925610
gk788248
gk361273
gk564830
gk287183
gk917275
gk449201
gk461664
gk745587
WBVar01527063
WBVar01885141
WBVar01550678
WBVar01885140
WBVar01845962
WBVar00053741
WBVar00053746

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005238 8315524 8316278 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_8314268..8315523   1256 X: 8314268-8315523 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005238 8315524 8316278 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
755

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_8316279..8317636   1358 X: 8316279-8317636 Caenorhabditis elegans