WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5a.1 Sequence Name  C54D2.5a.1
Length (nt)  5953   Chromosome Location  X: 7847947-7875954
Chromosome . Primary Identifier  X Chromosome Location . Start  7847947
Chromosome Location . End  7875954 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5a C54D2.5a 5514   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.1 7847947 7875954 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240732   332   X: 7847947-7848278 Caenorhabditis elegans
Exon240734   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240741   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240748   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240755   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240762   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240769   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240776   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240783   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240790   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240797   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240807   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240812   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240819   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240826   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240833   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240840   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240847   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240854   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240861   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240868   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240875   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240882   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240889   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240896   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240903   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240910   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240917   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240926   144   X: 7861164-7861307 Caenorhabditis elegans
Exon240943   34   X: 7875811-7875844 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.1 7847947 7875954 -1

1 Sequence

Length
5953

1 Sequence Ontology Term

Identifier Name Description
transcript