WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5a.2 Sequence Name  C54D2.5a.2
Length (nt)  6184   Chromosome Location  X: 7847682-7875954
Chromosome . Primary Identifier  X Chromosome Location . Start  7847682
Chromosome Location . End  7875954 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5a C54D2.5a 5514   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.2 7847682 7875954 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240729   597   X: 7847682-7848278 Caenorhabditis elegans
Exon240735   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240742   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240749   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240756   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240763   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240770   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240777   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240784   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240791   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240798   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240808   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240813   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240820   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240827   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240834   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240841   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240848   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240855   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240862   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240869   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240876   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240883   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240890   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240897   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240904   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240911   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240918   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240927   144   X: 7861164-7861307 Caenorhabditis elegans
Exon240945   52   X: 7875903-7875954 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.2 7847682 7875954 -1

1 Sequence

Length
6184

1 Sequence Ontology Term

Identifier Name Description
transcript