WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5a.3 Sequence Name  C54D2.5a.3
Length (nt)  6133   Chromosome Location  X: 7847682-7861308
Chromosome . Primary Identifier  X Chromosome Location . Start  7847682
Chromosome Location . End  7861308 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5a C54D2.5a 5514   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.3 7847682 7861308 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240728   597   X: 7847682-7848278 Caenorhabditis elegans
Exon240736   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240743   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240750   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240757   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240764   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240771   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240778   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240785   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240792   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240799   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240809   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240814   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240821   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240828   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240835   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240842   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240849   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240856   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240863   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240870   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240877   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240884   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240891   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240898   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240905   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240912   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240919   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240931   145   X: 7861164-7861308 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.3 7847682 7861308 -1

1 Sequence

Length
6133

1 Sequence Ontology Term

Identifier Name Description
transcript