WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200502 Gene Name  C54D2.14
Sequence Name  ? C54D2.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including glh-4; glh-1; and pgl-3 based on RNA-seq studies. Is affected by Cadmium Chloride based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 293
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200502

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C54D2.14 C54D2.14 293   X: 7825780-7826072
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk964260
gk964193
gk964194
gk963896
gk963732
gk964088
gk964087
WBVar02121817
WBVar01601968
WBVar01849309
gk286129
gk286128

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00200502 7825780 7826072 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7826073..7827084   1012 X: 7826073-7827084 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Transcripts that showed significantly increased expression in N2 animals exposed to 30 uM CdCl2 for five days starting from L4. edgeR, fold change > 2, p < 0.05. WBPaper00066204:CdCl2_upregulated_mRNA
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00200502 7825780 7826072 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
293

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7825770..7825779   10 X: 7825770-7825779 Caenorhabditis elegans