WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195886 Gene Name  F08C6.8
Sequence Name  ? F08C6.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 and ogt-1 based on microarray and RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 132
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195886

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F08C6.8 F08C6.8 132   X: 7585378-7585509
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk964260
gk963896
gk963732
gk963873
gk963874
gk964088
gk964087
gk377269
tm12847
gk285544
WBVar02056440

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195886 7585378 7585509 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7585510..7586208   699 X: 7585510-7586208 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195886 7585378 7585509 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
132

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7584433..7585377   945 X: 7584433-7585377 Caenorhabditis elegans