WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00202174 Gene Name  C10A4.12
Sequence Name  ? C10A4.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 and pmt-2 based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 186
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00202174

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C10A4.12 C10A4.12 186   X: 7426279-7426464
 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk964260
gk963873
gk963874
gk964088
gk964087
gk964003
gk964004
gk537868
gk859336
gk961291

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00202174 7426279 7426464 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7426465..7427353   889 X: 7426465-7427353 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts that showed significantly decreased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:pmt-2(RNAi)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00202174 7426279 7426464 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
186

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7424915..7426278   1364 X: 7424915-7426278 Caenorhabditis elegans