WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198393 Gene Name  K03A1.10
Sequence Name  ? K03A1.10 Organism  Caenorhabditis elegans
Automated Description  Enriched in VB2 and neurons based on RNA-seq and single-cell RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 144
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198393

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K03A1.10 K03A1.10 144   X: 7283076-7283219
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk964260
gk963778
gk963873
gk963874
gk964088
gk964087
gk964003
gk964004
tm11200
WBVar02045053
WBVar00048001
gk284863

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198393 7283076 7283219 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7280323..7283075   2753 X: 7280323-7283075 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts enriched in VB2 according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00066550:VB2_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198393 7283076 7283219 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
144

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7283220..7292131   8912 X: 7283220-7292131 Caenorhabditis elegans