WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196142 Gene Name  B0403.7
Sequence Name  ? B0403.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 60
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196142

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0403.7 B0403.7 60   X: 7047695-7047754
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964260
gk963873
gk963874
gk963727
gk963729
WBVar01882811
gk963728
gk839751

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196142 7047695 7047754 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7037612..7047694   10083 X: 7037612-7047694 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196142 7047695 7047754 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
60

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7047755..7050589   2835 X: 7047755-7050589 Caenorhabditis elegans