WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045176 Gene Name  C53B7.8
Sequence Name  ? C53B7.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2; mett-10; and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 71
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045176

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C53B7.8 C53B7.8 71   X: 6867938-6868008
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk964260
gk962713
WBVar02120888
WBVar01782237

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00045176 6867938 6868008 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_6868009..6868631   623 X: 6868009-6868631 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  mRNAs that showed significantly decreased expression in polysomal fractions in daf-2(e1370) comparing to in daf-2(e1370);daf-16(mu86), according to RNAseq study. Differentially expressed genes were determined using cuffdiff across all pairs. WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
  mRNAs that showed significantly decreased expression in polysomal fractions in N2 comparing to in daf-2(e1370), according to RNAseq study. Differentially expressed genes were determined using cuffdiff across all pairs. WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
  Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates. DESeq2, p-value < 0.05, fold change > 2. WBPaper00061357:mett-10(ok2204)_upregulated_OP50

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00045176 6867938 6868008 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
71

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_6865940..6867937   1998 X: 6865940-6867937 Caenorhabditis elegans