WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:SSSD1.1a.1 Sequence Name  SSSD1.1a.1
Length (nt)  2577   Chromosome Location  X: 6379396-6391591
Chromosome . Primary Identifier  X Chromosome Location . Start  6379396
Chromosome Location . End  6391591 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
SSSD1.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020130 igcm-2 SSSD1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SSSD1.1a SSSD1.1a 2409   X: 6379564-6379722

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:SSSD1.1a.1 6379396 6391591 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon236594   327   X: 6379396-6379722 Caenorhabditis elegans
Exon236595   64   X: 6379771-6379834 Caenorhabditis elegans
Exon236597   61   X: 6379995-6380055 Caenorhabditis elegans
Exon236599   180   X: 6380148-6380327 Caenorhabditis elegans
Exon236601   136   X: 6380531-6380666 Caenorhabditis elegans
Exon236603   134   X: 6380712-6380845 Caenorhabditis elegans
Exon236605   192   X: 6380894-6381085 Caenorhabditis elegans
Exon236607   79   X: 6381363-6381441 Caenorhabditis elegans
Exon236609   123   X: 6381488-6381610 Caenorhabditis elegans
Exon236611   122   X: 6381656-6381777 Caenorhabditis elegans
Exon236613   112   X: 6381830-6381941 Caenorhabditis elegans
Exon236615   149   X: 6381988-6382136 Caenorhabditis elegans
Exon236617   115   X: 6383184-6383298 Caenorhabditis elegans
Exon236619   167   X: 6383367-6383533 Caenorhabditis elegans
Exon236621   133   X: 6384170-6384302 Caenorhabditis elegans
Exon236623   119   X: 6384364-6384482 Caenorhabditis elegans
Exon236625   147   X: 6384548-6384694 Caenorhabditis elegans
Exon236633   160   X: 6388260-6388419 Caenorhabditis elegans
Exon236639   57   X: 6391535-6391591 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:SSSD1.1a.1 6379396 6391591 -1

1 Sequence

Length
2577

1 Sequence Ontology Term

Identifier Name Description
transcript