WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00174322 Gene Name  21ur-14519
Sequence Name  ? F22F4.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by sid-2 based on RNA-seq studies. Biotype  SO:0001638
Genetic Position  X :-3.93597 ±0.008381 Length (nt)  ? 21
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00174322

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F22F4.7 F22F4.7 21   X: 5996101-5996121
 

Other

0 CDSs

0 RNAi Result

5 Allele

Public Name
gk964260
gk963249
gk963217
ok481
gk281849

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00174322 5996101 5996121 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_5996122..5996155   34 X: 5996122-5996155 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression after 24 hours of induction of human beta Amyloid at young adult stage A 2-fold change in expression level and a false discovery rate analog of p < 0.05. WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
  Transcripts that showed significantly decreased expression in sid-2(mj465) animals comparing to in N2. FDR < 0.01, fold change > 2. Stistical analysis was performed using Benjamini-Hochberg (BH) adjustment using the MATLAB (Mathworks) function nbintest with the VarianceLink setting LocalRegression. WBPaper00060479:sid-2(mj465)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00174322 5996101 5996121 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
21

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_5992871..5996100   3230 X: 5992871-5996100 Caenorhabditis elegans