WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00284867 Gene Name  T22B7.22
Sequence Name  ? T22B7.22 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including coh-1; ogt-1; and hda-2 based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  X:± Length (nt)  ? 57
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00284867

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T22B7.22.1 T22B7.22.1 57   X: 5659967-5660023
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22B7.22 T22B7.22 57   X: 5659967-5660023

0 RNAi Result

1 Allele

Public Name
gk964260

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00284867 5659967 5660023 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_5660024..5661454   1431 X: 5660024-5661454 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals. DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. WBPaper00062159:hda-2(ok1479)_upregulated
  Transcripts that showed significantly decreased expression in scc-1(ubs19) comparing to in control animals. DESeq2 v.1.34, fold change > 2, FDR < 0.05. WBPaper00067078:scc-1(ubs19)_downregulated
  Transcripts that showed significantly decreased expression in scc-1(ubs19);coh-1(ubs26) comparing to in control animals. DESeq2 v.1.34, fold change > 2, FDR < 0.05. WBPaper00067078:scc-1(ubs19);coh-1(ubs26)_downregulated
Fungi: Myzocytiopsis humicola extract Transcripts that showed significantly increased expression in old-1(ok1273) L4 larva animals after 4 hours of exposure to oomycete Myzocytiopsis humicola extract. Differentially expressed genes as determined by Kallisto and Sleuth (pval < 0.01, qval < 0.1, fold change > 2). WBPaper00065995:M.humicola-extract_upregulated_old-1(ok1273)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00284867 5659967 5660023 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
57

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_5659864..5659966   103 X: 5659864-5659966 Caenorhabditis elegans