WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42D8.8a.1 Sequence Name  C42D8.8a.1
Length (nt)  2741   Chromosome Location  X: 5112422-5116866
Chromosome . Primary Identifier  X Chromosome Location . Start  5112422
Chromosome Location . End  5116866 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42D8.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000149 apl-1 C42D8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42D8.8a C42D8.8a 2061   X: 5113100-5113420

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C42D8.8a.1 5112422 5116866 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232620   999   X: 5112422-5113420 Caenorhabditis elegans
Exon232623   129   X: 5113469-5113597 Caenorhabditis elegans
Exon232624   199   X: 5113650-5113848 Caenorhabditis elegans
Exon232626   183   X: 5113898-5114080 Caenorhabditis elegans
Exon232628   197   X: 5114124-5114320 Caenorhabditis elegans
Exon232630   210   X: 5114374-5114583 Caenorhabditis elegans
Exon232632   134   X: 5114723-5114856 Caenorhabditis elegans
Exon232634   93   X: 5114910-5115002 Caenorhabditis elegans
Exon232636   234   X: 5115139-5115372 Caenorhabditis elegans
Exon232638   127   X: 5115556-5115682 Caenorhabditis elegans
Exon232641   168   X: 5116171-5116338 Caenorhabditis elegans
Exon232644   68   X: 5116799-5116866 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C42D8.8a.1 5112422 5116866 -1

1 Sequence

Length
2741

1 Sequence Ontology Term

Identifier Name Description
transcript