WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195992 Gene Name  F09F9.7
Sequence Name  ? F09F9.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by met-2 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 190
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195992

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F09F9.7 F09F9.7 190   X: 4129899-4130088
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk963725
gk964260
gk277416
h8614
WBVar01814656
WBVar01814655
gk862241

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195992 4129899 4130088 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_4130089..4135154   5066 X: 4130089-4135154 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in met-2(n4256) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:met-2(n4256)_upregulated
Bacteria diet: enterotoxigenic Escherichia coli (ETEC). Transcripts that showed significantly inreased expression after young adult N2 animals were cultured with enterotoxigenic Escherichia coli (ETEC) for five days. DESeq2, log2FC > 2 and p-value < 0.05. WBPaper00066289:Enterotoxigenic-E.coli_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195992 4129899 4130088 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
190

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_4128451..4129898   1448 X: 4128451-4129898 Caenorhabditis elegans