WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00022926 Gene Name  C16B8.5
Sequence Name  ? C16B8.5 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by rsr-2 and camt-1 based on tiling array and RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 362
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00022926

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C16B8.5 C16B8.5 362   X: 3985104-3985465
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk963725
gk964260
gk964060
tm11210
WBVar01830140
WBVar02048747
gk418646
gk366957
gk423752
gk277142
gk277141
WBVar02050474

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00022926 3985104 3985465 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_3985466..3988888   3423 X: 3985466-3988888 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly altered expression at URX, AQR, and PQR neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
  Genes that showed significantly decreased expression level in rsr-2(RNAi) animals comparing to in gfp(RNAi) control. Fold change > 1.2 or < 0.8. WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
  Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. Fold change > 2, p-value < 0.05. WBPaper00060661:sensory-neuron_enriched
  Single-cell RNA-Seq cell group 20_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:20_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00022926 3985104 3985465 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
362

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_3978925..3985103   6179 X: 3978925-3985103 Caenorhabditis elegans