Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F31A9.8 | F31A9.8 |
464
 |
X: 1791722-1792573 |
Other
24 Allele
| Public Name |
|---|
| gk963725 |
| gk964444 |
| gk964445 |
| gk963977 |
| WBVar01757452 |
| WBVar01757453 |
| WBVar01757454 |
| WBVar01757455 |
| tm10740 |
| WBVar02123948 |
| WBVar02123610 |
| WBVar02121345 |
| WBVar02122180 |
| gk272138 |
| gk272137 |
| gk272136 |
| gk848540 |
| gk715562 |
| gk678139 |
| WBVar01824704 |
| WBVar01619041 |
| WBVar02026679 |
| gk272148 |
| WBVar02105925 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00219685 | 1791722 | 1792573 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_1792574..1794815 | 2242 | X: 1792574-1794815 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in csr-1(RNAi) comparing to in N2 animals fed wth empty vector. | DESeq2 v1.20.0,, fold change > 2, FDR < 0.05. | WBPaper00066919:csr-1(RNAi)_upregulated | |
| Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. | Student's t-test, fold change > 2, p-value < 0.05. | WBPaper00055386:daf-2(e1370)_downregulated | |
| Transcripts that showed significantly decreased expression in swsn-1(os22ts) comparing to in N2 animals at young adult worms. | DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.) | WBPaper00060764:swsn-1(os22ts)_downregulated | |
| Transcripts that showed significantly decreased expression in sams-3(RNAi) comparing to N2 animals injected with empty vector. | Deseq FDR < 0.01, fold change > 2. | WBPaper00065005:sams-3(RNAi)_downregulated | |
| Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure. | Small RNAs (21-26nt) that showed significantly decreased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours. | DESeq2, FDR < 0.05 | WBPaper00056868:P.aeruginosa_downregulated_smallRNA |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_1790089..1791721 | 1633 | X: 1790089-1791721 | Caenorhabditis elegans |
