WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023194 Gene Name  Y75D11A.t2
Sequence Name  ? Y75D11A.t2 Organism  Caenorhabditis elegans
Automated Description  Is affected by ced-3 based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 74
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023194

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y75D11A.t2 Y75D11A.t2 74   X: 1764254-1764327
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk963725
gk964444
gk964445
gk963977
WBVar02123948
WBVar02123610
WBVar02121345
WBVar00091156

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00023194 1764254 1764327 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1764147..1764253   107 X: 1764147-1764253 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes differentially expressed in ced-3(n717) and ced-1(e1735) but not in pgrn-1(tm985) as compared to N2E. Differential expression analysis was performed using the EdgeR Bioconductor package (19910308), and differentially expressed genes were selected based on False Discovery Rate (FDR Benjamini Hochberg adjusted p-values) estimated at <=5%. WBPaper00044246:ced-3_ced-1_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00023194 1764254 1764327 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
74

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1764328..1765232   905 X: 1764328-1765232 Caenorhabditis elegans