WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199600 Gene Name  D1005.9
Sequence Name  ? D1005.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by bisphenol A based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 97
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199600

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:D1005.9 D1005.9 97   X: 1467764-1467860
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963725
gk964444
gk964445
WBVar01600549
gk528931
gk489404

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199600 1467764 1467860 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1464800..1467763   2964 X: 1464800-1467763 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression at the F3 germline after P0 animals were exposed to 100uM BPA for 48 hours starting at L4 larva stage, comparing to F3 germline of P0 animals exposed to DMSO control. p-value < 0.05, fold change > 1.5 or < 0.5. WBPaper00054571:BPA_F3_germline_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199600 1467764 1467860 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
97

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1467861..1470679   2819 X: 1467861-1470679 Caenorhabditis elegans