WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00044748 Gene Name  ZK402.6
Sequence Name  ? ZK402.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by Testosterone based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 24
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00044748

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:ZK402.6 ZK402.6 24   X: 1405499-1405522
 

Other

0 CDSs

0 RNAi Result

2 Allele

Public Name
gk963725
tm10744

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00044748 1405499 1405522 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1404998..1405498   501 X: 1404998-1405498 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes that are up or down regulated by more than 2.1 fold with the t-test p-value less than 0.01 are included in this cluster. Genes that are regulated by more than 2.1 fold with the t-test p-value less than 0.01 are included in this cluster. WBPaper00024393:strongly_regulated_dauer_genes
  Genes up or down regulated by 10e-09M of testosterone. The normalized values used were G/R ratio > 2.6 for up-regulation and G/R ratio < 0.38 for down-regulation, which corresponds to 1.39 and -1.39 log(base2) G/R ratio, respectively. The normalized values used were: G/R ratio > 2.6 for up-regulation and G/R ratio < 0.38 for down-regulation, which corresponds to 1.39 and -1.39 log(base2) G/R ratio, respectively. WBPaper00005124:testosterone_10-9M_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00044748 1405499 1405522 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
24

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1405523..1408835   3313 X: 1405523-1408835 Caenorhabditis elegans