Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:R193.6.1 | R193.6.1 |
2304
 |
X: 1148787-1151507 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:R193.6 | R193.6 |
174
|
X: 1150915-1150950 |
38 Allele
| Public Name |
|---|
| gk963725 |
| WBVar01757193 |
| WBVar00074727 |
| WBVar01824094 |
| gk748429 |
| gk681199 |
| gk316090 |
| gk571075 |
| gk480147 |
| gk447951 |
| gk855627 |
| gk420881 |
| gk326411 |
| gk699699 |
| gk794983 |
| gk763427 |
| gk695903 |
| gk571076 |
| gk422001 |
| gk634980 |
| gk565862 |
| gk454560 |
| gk741878 |
| gk626308 |
| gk646906 |
| gk881076 |
| gk315555 |
| WBVar01878043 |
| gk270674 |
| gk270673 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00304820 | 1148787 | 1151507 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_1151508..1152091 | 584 | X: 1151508-1152091 | Caenorhabditis elegans |
5 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in eat-2(ad465);dve-1(RNAi) animals comparing to eat-2(ad465) animals injected with empty vector. | fold change > 2, FDR < 0.01 | WBPaper00067391:dve-1(RNAi)_downregulated_eat-2(ad465) | |
| Transcripts that showed significantly decreased expression in npp-14(ax4543) comparing to in N2. | DESeq2. Statistically significant genes were chosen based on a BenjaminiHochberg adjusted P-value of 0.05. | WBPaper00067885:npp-14(ax4543)_downregulated | |
| Transcripts that showed significantly decreased expression in ash-2(RNAi) comparing to in wild type animals injected with vector. | Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed. | WBPaper00066232:ash-2(RNAi)_downregulated_WT | |
| Transcripts that showed significantly decreased expression in eat-2(ad465);atfs-1(RNAi) animals comparing to eat-2(ad465) animals injected with empty vector. | fold change > 2, FDR < 0.01 | WBPaper00067391:atfs-1(RNAi)_downregulated_eat-2(ad465) | |
| Transcripts that showed significantly increased expression in hsp-4(RNAi) comparing to N2 animals with control vector. | edgeR (v3.19, Bioconductor), p < 0.05, log2FC > 1.5 or < -1.5 | WBPaper00068266:hsp-4(RNAi)_upregulated_N2 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_1148586..1148786 | 201 | X: 1148586-1148786 | Caenorhabditis elegans |
